pacman::p_load(knitr, wakefield, MatchIt, tableone, captioner)
set.seed(1234)
library(wakefield)
df.patients <- r_data_frame(n = 250,
age(x = 30:78,
name = 'Age'),
sex(x = c("Male", "Female"),
prob = c(0.70, 0.30),
name = "Sex"))
df.patients$Sample <- as.factor('Patients')
summary(df.patients)
set.seed(1234)
df.population <- r_data_frame(n = 1000,
age(x = 18:80,
name = 'Age'),
sex(x = c("Male", "Female"),
prob = c(0.50, 0.50),
name = "Sex"))
df.population$Sample <- as.factor('Population')
summary(df.population)
mydata <- rbind(df.patients, df.population)
mydata$Group <- as.logical(mydata$Sample == 'Patients')
mydata$Distress <- ifelse(mydata$Sex == 'Male', age(nrow(mydata), x = 0:42, name = 'Distress'),
age(nrow(mydata), x = 15:42, name = 'Distress'))
pacman::p_load(tableone)
table1 <- CreateTableOne(vars = c('Age', 'Sex', 'Distress'),
data = mydata,
factorVars = 'Sex',
strata = 'Sample')
table1 <- print(table1,
printToggle = FALSE,
noSpaces = TRUE)
library(knitr)
kable(table1[,1:3],
align = 'c',
caption = 'Table 1: Comparison of unmatched samples')
set.seed(1234)
match.it <- matchit(Group ~ Age + Sex, data = mydata, method="nearest", ratio=1)
a <- summary(match.it)
kable(a$nn, digits = 2, align = 'c',
caption = 'Table 2: Sample sizes')
kable(a$sum.matched[c(1,2,4)], digits = 2, align = 'c',
caption = 'Table 3: Summary of balance for matched data')
plot(match.it, type = 'jitter', interactive = FALSE)
df.match <- match.data(match.it)[1:ncol(mydata)]
rm(df.patients, df.population)
pacman::p_load(tableone)
table4 <- CreateTableOne(vars = c('Age', 'Sex', 'Distress'),
data = df.match,
factorVars = 'Sex',
strata = 'Sample')
table4 <- print(table4,
printToggle = FALSE,
noSpaces = TRUE)
kable(table4[,1:3],
align = 'c',
caption = 'Table 4: Comparison of matched samples')